Yeast Segmentation Web Tool

Got microscopy images of yeast cells that you need to segment? Upload your image(s) and get downloadable segmentation results within minutes.
Upload up to 10 images (maximum image size: 8 MB each)

Questions? Check out our FAQ.

For more detailed benchmarks, check out our Bioinformatics paper.
If you find this tool useful, we'd highly appreciate any citations!

New: Check out our new heuristic mother-bud assignment feature!
For images of budding yeast, click the "output mother/bud labels" checkbox, and we will estimate which buds belong to which mothers.
Click here for more information.

For examples of how to upload output of this webtool into Python, Matlab, ImageJ, or R for analysis, check out our example postprocessing scripts.

For batch runs, try downloading our user-friendly Python code from our GitHub to run on your own local machine.